Citation sources

Updated weekly. Details via Crossref
Crossref Scopus Google Scholar
144 121 Search
2024
Tuberculosis research: Quo vadis
Drug Target Insights
2024
Phylogenomics
2024
An imputed ancestral reference genome for the Mycobacterium tuberculosis complex better captures structural genomic diversity for reference-based alignment workflows
Microbial Genomics
2024
Genomic diversity and clinical relevance ofMycobacterium simiae
ERJ Open Research
2024
Dual-centre evaluation of the FluoroType MTBDR version 2 assay for detection of Mycobacterium tuberculosis complex and resistance-conferring mutations in pulmonary and extrapulmonary samples from Denmark, Germany and Sierra Leone
Clinical Microbiology and Infection
2024
Mutational Dynamics Related to Antibiotic Resistance in M. tuberculosis Isolates from Serial Samples of Patients with Tuberculosis and Type 2 Diabetes Mellitus
Microorganisms
2024
Prison as a driver of recent transmissions of multidrug-resistant tuberculosis in Callao, Peru: a cross-sectional study
The Lancet Regional Health - Americas
2024
Challenging the gold standard: the limitations of molecular assays for detection ofMycobacterium tuberculosisheteroresistance
Thorax
2024
Characteristic SNPs defining the major multidrug-resistant Mycobacterium tuberculosis clusters identified by EuSeqMyTB to support routine surveillance, EU/EEA, 2017 to 2019
Eurosurveillance
2024
Molecular determinants of multidrug-resistant tuberculosis in Sierra Leone
Microbiology Spectrum
2024
Two-stage tuberculosis diagnostics: combining centrifugal microfluidics to detect TB infection and Inh and Rif resistance at the point of care with subsequent antibiotic resistance profiling by targeted NGS
Lab on a Chip
2024
Emergence of bedaquiline-resistant tuberculosis and of multidrug-resistant and extensively drug-resistant Mycobacterium tuberculosis strains with rpoB Ile491Phe mutation not detected by Xpert MTB/RIF in Mozambique: a retrospective observational study
The Lancet Infectious Diseases
2023
Use of High-Resolution Geospatial and Genomic Data to Characterize Recent Tuberculosis Transmission, Botswana
Emerging Infectious Diseases
2023
Afro-TB dataset as a large scale genomic data of Mycobacterium tuberuclosis in Africa
Scientific Data
2023
Transmission Dynamics of a Mycobacterium tuberculosis Complex Outbreak in an Indigenous Population in the Colombian Amazon Region
Microbiology Spectrum
2023
Transmission dynamics variability of lineage 2 Mycobacterium tuberculosis strains in Kobe, Japan, determined using population-based whole-genome sequencing analysis
Infection, Genetics and Evolution
2023
Comparative whole-genome sequence analysis of Mycobacterium tuberculosis isolated from pulmonary tuberculosis and tuberculous lymphadenitis patients in Northwest Ethiopia
Frontiers in Microbiology
2023
Drug-Resistant Tuberculosis on the Balkan Peninsula: Determination of Drug Resistance Mechanisms with Xpert MTB/XDR and Whole-Genome Sequencing Analysis
Microbiology Spectrum
2023
Genomic Characterization of Drug-Resistant Mycobacterium tuberculosis L2/Beijing Isolates from Astana, Kazakhstan
Antibiotics
2023
Analyse von Mycobacterium-tuberculosis-Gesamtgenomdaten: Schritt für Schritt zum Resistenzprofil
Trillium Diagnostik
2023
Genomic markers of drug resistance in Mycobacterium tuberculosis populations with minority variants
Journal of Clinical Microbiology
2023
Drug resistance prediction for Mycobacterium tuberculosis with reference graphs
Microbial Genomics
2023
Implementation of national whole-genome sequencing of Mycobacterium tuberculosis, National Public Health Laboratory, Singapore, 2019—2022
Microbial Genomics
2023
Performances of bioinformatics tools for the analysis of sequencing data of Mycobacterium tuberculosis complex strains
Tuberculosis
2023
In vitro activity of new combinations of β-lactam and β-lactamase inhibitors against the Mycobacterium tuberculosis complex
Microbiology Spectrum
2023
TransFlow: a Snakemake workflow for transmission analysis ofMycobacterium tuberculosiswhole-genome sequencing data
Bioinformatics
2023
Comprehensive Drug Resistance Characterization of Pulmonary Tuberculosis in Algeria: Insights on Mycobacterium tuberculosis Strains by Whole-Genome Sequencing
Microbial Drug Resistance
2023
A precision overview of genomic resistance screening in Ecuadorian isolates of Mycobacterium tuberculosis using web-based bioinformatics tools
PLOS ONE
2023
A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex
Nature Communications
2023
Borderline rpoB mutations transmit at the same rate as common rpoB mutations in a tuberculosis cohort in Bangladesh
Microbial Genomics
2023
Prolonged survival of a patient with active MDR-TB HIV co-morbidity: insights from a Mycobacterium tuberculosis strain with a unique genomic deletion
Frontiers in Medicine
2023
Pangenome Reconstruction of Mycobacterium tuberculosis as a Guide to Reveal Genomic Features Associated with Strain Clinical Phenotype
Microorganisms
2023
Resistance patterns and transmission of mono- and polyresistant TB: clinical impact of WGS
JAC-Antimicrobial Resistance
2023
Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis
The Lancet Microbe
2023
Investigation of genomic mutations and their association with phenotypic resistance to new and repurposed drugs in Mycobacterium tuberculosis complex clinical isolates
Journal of Antimicrobial Chemotherapy
2023
Comparative Study on Tuberculosis Drug Resistance and Molecular Detection Methods Among Different Mycobacterium Tuberculosis Lineages
Infection and Drug Resistance
2023
Evolution and transmission of antibiotic resistance is driven by Beijing lineage Mycobacterium tuberculosis in Vietnam
Microbiology Spectrum
2023
Tuberculosis Variant with Rifampin Resistance Undetectable by Xpert MTB/RIF, Botswana
Emerging Infectious Diseases
2023
Mycobacterium tuberculosis Sub-Lineage 4.2.2/SIT149 as Dominant Drug-Resistant Clade in Northwest Ethiopia 2020–2022: In-silico Whole-Genome Sequence Analysis
Infection and Drug Resistance
2023
Genomic epidemiology analysis of drug-resistant Mycobacterium tuberculosis distributed in Mexico
PLOS ONE
2023
Genomic, phenotypic and demographic characterization of Mycobacterium tuberculosis in Israel in 2021
Frontiers in Cellular and Infection Microbiology
2022
Sub-Lineage Specific Phenolic Glycolipid Patterns in the Mycobacterium tuberculosis Complex Lineage 1
Frontiers in Microbiology
2022
Molecular Epidemiology of Mycobacterium tuberculosis Complex Strains in Urban and Slum Settings of Nairobi, Kenya
Genes
2022
Origin and Global Expansion of Mycobacterium tuberculosis Complex Lineage 3
Genes
2022
Whole-genome sequencing of presumptive MDR-TB isolates from a tertiary healthcare setting in Mumbai
Journal of Global Antimicrobial Resistance
2022
SAM-TB: a whole genome sequencing data analysis website for detection of Mycobacterium tuberculosis drug resistance and transmission
Briefings in Bioinformatics
2022
Connection between two historical tuberculosis outbreak sites in Japan, Honshu, by a new ancestral Mycobacterium tuberculosis L2 sublineage
Epidemiology and Infection
2022
Drug susceptibility testing of Mycobacterium tuberculosis using next generation sequencing and Mykrobe software
Journal of microbiology, epidemiology and immunobiology
2022
Emergence of bedaquiline resistance in a high tuberculosis burden country
European Respiratory Journal
2022
Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis
Nature Communications
2022
Emergence of multi-drug-resistant Mycobacterium tuberculosis in Niger: A snapshot based on whole-genome sequencing
PLOS Neglected Tropical Diseases
2022
Molecular Epidemiology of Mycobacterium abscessus Isolates Recovered from German Cystic Fibrosis Patients
Microbiology Spectrum
2022
Using genetic data to identify transmission risk factors: Statistical assessment and application to tuberculosis transmission
PLOS Computational Biology
2022
A review on the application of bioinformatics tools in food microbiome studies
Briefings in Bioinformatics
2022
Genome-Wide Study of Drug Resistant Mycobacterium tuberculosis and Its Intra-Host Evolution during Treatment
Microorganisms
2022
High Throughput Sequencing for Clinical Tuberculosis: An Overview
Pathogens
2022
TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis
PLOS ONE
2022
Diagnostic performance of the AID line probe assay in the detection of Mycobacterium tuberculosis and drug resistance in Romanian patients with presumed TB
PLOS ONE
2022
MycoVarP: Mycobacterium Variant and Drug Resistance Prediction Pipeline for Whole-Genome Sequence Data Analysis
Frontiers in Bioinformatics
2022
High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region
Genome Medicine
2022
Application of Next Generation Sequencing for Diagnosis and Clinical Management of Drug-Resistant Tuberculosis: Updates on Recent Developments in the Field
Frontiers in Microbiology
2022
Investigating resistance in clinical Mycobacterium tuberculosis complex isolates with genomic and phenotypic antimicrobial susceptibility testing: a multicentre observational study
The Lancet Microbe
2022
Anti-tuberculosis drug resistance in Slovakia, 2018–2019: The first whole-genome epidemiological study
Journal of Clinical Tuberculosis and Other Mycobacterial Diseases
2022
Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence typing
Nature Communications
2022
Clinical evaluation of the cobas® MTB-RIF/INH reagent and the cobas® 6800 for the detection of isoniazid and rifampicin resistance
Tuberculosis
2022
Ancient and recent differences in the intrinsic susceptibility of Mycobacterium tuberculosis complex to pretomanid
Journal of Antimicrobial Chemotherapy
2021
Overcoming the Challenges of Pyrazinamide Susceptibility Testing in Clinical Mycobacterium tuberculosis Isolates
Antimicrobial Agents and Chemotherapy
2021
Rapid genomic first- and second-line drug resistance prediction from clinical Mycobacterium tuberculosis specimens using Deeplex-MycTB
European Respiratory Journal
2021
Whole-genome comparative analysis at the lineage/sublineage level discloses relationships between Mycobacterium tuberculosis genotype and clinical phenotype
PeerJ
2021
Improving tuberculosis surveillance by detecting international transmission using publicly available whole genome sequencing data
Eurosurveillance
2021
Implementation of whole genome sequencing for tuberculosis diagnostics in a low-middle income, high MDR-TB burden country
Scientific Reports
2021
Outbreak of pre- and extensively drug-resistant tuberculosis in northern Italy: urgency of cross-border, multidimensional, surveillance systems
European Respiratory Journal
2021
Methods in Molecular Biology
2021
Insight into the drug resistance whole genome of Mycobacterium tuberculosis isolates from Khyber Pakhtunkhwa, Pakistan
Infection, Genetics and Evolution
2021
The global outbreak of Mycobacterium chimaera infections in cardiac surgery—a systematic review of whole-genome sequencing studies and joint analysis
Clinical Microbiology and Infection
2021
Assessment of the GenoType MTBDRsl VER 2.0 compared to the phenotypic drug susceptibility testing and whole genome sequencing for the rapid detection of resistance to fluoroquinolone and second-line injectable drugs among rifampicin-resistant Mycobacterium tuberculosis isolates
Archives of Microbiology
2021
GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning
Genome Medicine
2021
Essential Tuberculosis
2021
False detection of rifampicin resistance using Xpert® MTB/RIF Ultra assay due to an A451V mutation in Mycobacterium tuberculosis
JAC-Antimicrobial Resistance
2021
Comprehensive and accurate genetic variant identification from contaminated and low-coverage Mycobacterium tuberculosis whole genome sequencing data
Microbial Genomics
2021
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches
Journal of Clinical Microbiology
2021
Capacity building for whole genome sequencing of Mycobacterium tuberculosis and bioinformatics in high TB burden countries
Briefings in Bioinformatics
2021
Evaluation of the Roche cobas MTB and MTB-RIF/INH Assays in Samples from Germany and Sierra Leone
Journal of Clinical Microbiology
2021
Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs
European Respiratory Journal
2021
Whole Genome Sequence Analysis of Mycobacterium bovis Cattle Isolates, Algeria
Pathogens
2021
Microevolution of Mycobacterium tuberculosis Subpopulations and Heteroresistance in a Patient Receiving 27 Years of Tuberculosis Treatment in Germany
Antimicrobial Agents and Chemotherapy
2021
Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel
Microbial Genomics
2021
Design of Multidrug-Resistant Tuberculosis Treatment Regimens Based on DNA Sequencing
Clinical Infectious Diseases
2021
Performance and Agreement Between WGS Variant Calling Pipelines Used for Bovine Tuberculosis Control: Toward International Standardization
Frontiers in Veterinary Science
2021
Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis
Microbial Genomics
2020
Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex
Genome Medicine
2020
Mycobacterium tuberculosisComplex Lineage 3 as Causative Agent of Pulmonary Tuberculosis, Eastern Sudan1
Emerging Infectious Diseases
2020
Whole Genome Sequencing Results Associated with Minimum Inhibitory Concentrations of 14 Anti-Tuberculosis Drugs among Rifampicin-Resistant Isolates of Mycobacterium Tuberculosis from Iran
Journal of Clinical Medicine
2020
Population Structure of Mycobacterium bovis in Germany: a Long-Term Study Using Whole-Genome Sequencing Combined with Conventional Molecular Typing Methods
Journal of Clinical Microbiology
2020
Mycobacterium tuberculosis progresses through two phases of latent infection in humans
Nature Communications
2020
Characterization of Genomic Variants Associated with Resistance to Bedaquiline and Delamanid in Naive Mycobacterium tuberculosis Clinical Strains
Journal of Clinical Microbiology
2020
Prevalence and drivers of false-positive rifampicin-resistant Xpert MTB/RIF results: a prospective observational study in Rwanda
The Lancet Microbe
2020
Mycobacterium tuberculosis complex in wildlife: Review of current applications of antemortem and postmortem diagnosis
Veterinary World
2020
Initial resistance to companion drugs should not be considered an exclusion criterion for the shorter multidrug-resistant tuberculosis treatment regimen
International Journal of Infectious Diseases
2020
Antimicrobial Susceptibility and Phylogenetic Relations in a German Cohort Infected with Mycobacterium abscessus
Journal of Clinical Microbiology
2020
Multidrug-resistant Mycobacterium tuberculosis: a report of cosmopolitan microbial migration and an analysis of best management practices
BMC Infectious Diseases
2020
Detection of low-frequency resistance-mediating SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains with binoSNP
Scientific Reports
2020
Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences
Microbial Genomics
2020
Use of a Whole Genome Sequencing-based approach for Mycobacterium tuberculosis surveillance in Europe in 2017–2019: an ECDC pilot study
European Respiratory Journal
2020
The Bacteria Genome Pipeline (BAGEP): an automated, scalable workflow for bacteria genomes with Snakemake
PeerJ
2020
Application of Targeted Next-Generation Sequencing Assay on a Portable Sequencing Platform for Culture-Free Detection of Drug-Resistant Tuberculosis from Clinical Samples
Journal of Clinical Microbiology
2019
Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe
Wellcome Open Research
2019
Accuracy of whole-genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany
European Respiratory Journal
2019
Bridging the TB data gap: in silico extraction of rifampicin-resistant tuberculosis diagnostic test results from whole genome sequence data
PeerJ
2019
Isoniazid Resistance in Mycobacterium tuberculosis Is a Heterogeneous Phenotype Composed of Overlapping MIC Distributions with Different Underlying Resistance Mechanisms
Antimicrobial Agents and Chemotherapy
2019
No Evidence for Acquired Mutations Associated with Cytochrome bc 1 Inhibitor Resistance in 13,559 Clinical Mycobacterium tuberculosis Complex Isolates
Antimicrobial Agents and Chemotherapy
2019
Acquisition of Cross-Resistance to Bedaquiline and Clofazimine following Treatment for Tuberculosis in Pakistan
Antimicrobial Agents and Chemotherapy
2019
A large scale evaluation of TBProfiler and Mykrobe for antibiotic resistance prediction in Mycobacterium tuberculosis
PeerJ
2019
How Well Do Routine Molecular Diagnostics Detect Rifampin Heteroresistance in Mycobacterium tuberculosis?
Journal of Clinical Microbiology
2019
Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases
Eurosurveillance
Additional cited-by details will be shown when available from Crossref