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2025
Unveiling the evolution of antimicrobial peptides in gut microbes via foundation-model-powered framework
Cell Reports
2025
Structural information in therapeutic peptides: Emerging applications in biomedicine
FEBS Open Bio
2025
Antimicrobial peptide class that forms discrete β-barrel stable pores anchored by transmembrane helices
Nature Communications
2025
Comparative Genomic Analysis of Lactiplantibacillus plantarum: Insights into Its Genetic Diversity, Metabolic Function, and Antibiotic Resistance
Genes
2025
The Antimicrobial Peptide Pipeline: A Bacteria-Centric AMP Predictor
Current Gene Therapy
2025
Olive Leaf Protein Hydrolysate as a Novel Source of Antimicrobial Peptides: Peptidomic Characterization and In Silico Evaluation
Molecules
2025
Discovery of antimicrobial peptides with notable antibacterial potency by an LLM-based foundation model
Science Advances
2025
Harnessing AI for enhanced screening of antimicrobial bioactive compounds in food safety and preservation
Trends in Food Science & Technology
2025
Perspectives in clinical microbiology for combating multi-drug resistant bacterial infections
Frontiers in Cellular and Infection Microbiology
2025
Meat Animal Biologics Discovery from the Rumen Microbiome: Application of Genomics
Meat and Muscle Biology
2025
A Multi‐Property Optimizing Generative Adversarial Network for de novo Antimicrobial Peptide Design
Advanced Science
2025
Unlocking Antimicrobial Peptides: In Silico Proteolysis and Artificial Intelligence-Driven Discovery from Cnidarian Omics
Molecules
2025
How Artificial Intelligence Assists in Overcoming Drug Resistance?
Medicinal Research Reviews
2025
Accelerating antimicrobial peptide discovery in global microbial ecosystems via machine learning
Matter
2025
Painting Peptides With Antimicrobial Potency Through Deep Reinforcement Learning
Advanced Science
2025
Aggregation-prone antimicrobial peptides target gram-negative bacterial nucleic acids and protein synthesis
Acta Biomaterialia
2025
AMPGP: Discovering Highly Effective Antimicrobial Peptides via Deep Learning
Journal of Chemical Information and Modeling
2025
Leveraging protein language models for robust antimicrobial peptide detection
Methods
2025
Metaproteomics in the One Health framework for unraveling microbial effectors in microbiomes
Microbiome
2025
Exploring Tenebrio molitor as a source of low‐molecular‐weight antimicrobial peptides using a n in silico approach: correlation of molecular features and molecular docking
Journal of the Science of Food and Agriculture
2025
Unlocking Antimicrobial Peptides from Marine Invertebrates: A Comprehensive Review of Antimicrobial Discovery
Antibiotics
2025
Screening and preliminary analysis of antimicrobial peptide genes in Octopus sinensis
Fish & Shellfish Immunology
2025
Essay: Using Machine Learning for Antibiotic Discovery
Physical Review Letters
2025
AI-Driven Antimicrobial Peptide Discovery: Mining and Generation
Accounts of Chemical Research
2025
Explainable deep learning and virtual evolution identifies antimicrobial peptides with activity against multidrug-resistant human pathogens
Nature Microbiology
2025
Uncovering encrypted antimicrobial peptides in health-associated Lactobacillaceae by large-scale genomics and machine learning
Microbiome
2025
A generative artificial intelligence approach for the discovery of antimicrobial peptides against multidrug-resistant bacteria
Nature Microbiology
2025
Synthesis and Evaluation of Aquatic Antimicrobial Peptides Derived from Marine Metagenomes Using a High-Throughput Screening Approach
Marine Drugs
2024
Antimicrobial peptides: Source, application and recent developments
Process Biochemistry
2024
Challenges in computational discovery of bioactive peptides in ’omics data
PROTEOMICS
2024
An efficient hybrid deep learning architecture for predicting short antimicrobial peptides
PROTEOMICS
2024
Diff-AMP: tailored designed antimicrobial peptide framework with all-in-one generation, identification, prediction and optimization
Briefings in Bioinformatics
2024
Machine learning for antimicrobial peptide identification and design
Nature Reviews Bioengineering
2024
Perspectives in Searching Antimicrobial Peptides (AMPs) Produced by the Microbiota
Microbial Ecology
2024
A catalog of small proteins from the global microbiome
Nature Communications
2024
Enhancing Antimicrobial Peptide Activity through Modifications of Charge, Hydrophobicity, and Structure
International Journal of Molecular Sciences
2024
Discovery of antimicrobial peptides in the global microbiome with machine learning
Cell
2024
Waste to resource: Mining antimicrobial peptides in sludge from metagenomes using machine learning
Environment International
2024
Unveiling Encrypted Antimicrobial Peptides from Cephalopods’ Salivary Glands: A Proteolysis-Driven Virtual Approach
ACS Omega
2024
Machine learning tools for peptide bioactivity evaluation – Implications for cell culture media optimization and the broader cultivated meat industry
Current Research in Food Science
2024
Bioprospecting of culturable marine biofilm bacteria for novel antimicrobial peptides
iMeta
2024
A novel bioinformatic method for the identification of antimicrobial peptides in metagenomes
Journal of Applied Microbiology
2024
Functional and evolutionary significance of unknown genes from uncultivated taxa
Nature
2023
Designing antimicrobial peptides using deep learning and molecular dynamic simulations
Briefings in Bioinformatics
2023
Bioprospecting of unexplored halophilic actinobacteria against human infectious pathogens
3 Biotech
2023
Novel Antimicrobial Peptides from Saline Environments Active against E. faecalis and S. aureus: Identification, Characterisation and Potential Usage
International Journal of Molecular Sciences
2023
Discovery of Lactomodulin, a Unique Microbiome-Derived Peptide That Exhibits Dual Anti-Inflammatory and Antimicrobial Activity against Multidrug-Resistant Pathogens
International Journal of Molecular Sciences
2023
Advances in Antimicrobial Peptide Discovery via Machine Learning and Delivery via Nanotechnology
Microorganisms
2023
Characterization and Engineering Studies of a New Endolysin from the Propionibacterium acnes Bacteriophage PAC1 for the Development of a Broad-Spectrum Artilysin with Altered Specificity
International Journal of Molecular Sciences
2023
Embedded-AMP: A Multi-Thread Computational Method for the Systematic Identification of Antimicrobial Peptides Embedded in Proteome Sequences
Antibiotics
2023
A first insight into the Polish Bochnia Salt Mine metagenome
Environmental Science and Pollution Research
2023
Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
Toxins
2023
Exploring resistomes and microbiomes in pilot-scale microalgae-bacteria wastewater treatment systems for use in low-resource settings
Science of The Total Environment
2023
Molecular de-extinction of ancient antimicrobial peptides enabled by machine learning
Cell Host & Microbe
2023
Fighting pathogens in two battlefields: Antimicrobial defenses in the African lungfish
PLOS Pathogens
2023
Testing Antimicrobial Properties of Selected Short Amyloids
International Journal of Molecular Sciences
2023
Antimicrobial peptides recognition using weighted physicochemical property encoding
Journal of Bioinformatics and Computational Biology
2022
Actinobacteria
2022
Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data
Briefings in Bioinformatics
2022
Identification of antimicrobial peptides from the human gut microbiome using deep learning
Nature Biotechnology
2022
Unveiling the genomic potential of Pseudomonas type strains for discovering new natural products
Microbial Genomics
2022
Network Science and Group Fusion Similarity-Based Searching to Explore the Chemical Space of Antiparasitic Peptides
ACS Omega
2022
The dynamic landscape of peptide activity prediction
Computational and Structural Biotechnology Journal
2021
iAMP-CA2L: a new CNN-BiLSTM-SVM classifier based on cellular automata image for identifying antimicrobial peptides and their functional types
Briefings in Bioinformatics
2021
The Methods of Digging for “Gold” within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools
Genes
2021
Metabolic and molecular modelling of zebrafish gut biome to unravel antimicrobial peptides through metagenomics
Microbial Pathogenesis
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