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2024	Effect of tokenization on transformers for biological sequences Bioinformatics Edo Dotan, Gal Jaschek, Tal Pupko, Yonatan Belinkov
2024	A robust deep learning approach for identification of RNA 5-methyluridine sites Scientific Reports Md. Shazzad Hossain Shaon, Tasmin Karim, Md. Mamun Ali, Kawsar Ahmed, Francis M. Bui, Li Chen, Mohammad Ali Moni
2024	Communications in Computer and Information Science K. Veningston, P. V. Venkateswara Rao, M. Pravallika Devi, S. Pranitha Reddy, M. Ronalda
2024	Harnessing AI-Powered Genomic Research for Sustainable Crop Improvement Agriculture Elżbieta Wójcik-Gront, Bartłomiej Zieniuk, Magdalena Pawełkowicz
2024	Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning BioData Mining Jakub Horvath, Pavel Jedlicka, Marie Kratka, Zdenek Kubat, Eduard Kejnovsky, Matej Lexa
2023	Reference-Free Plant Disease Detection Using Machine Learning and Long-Read Metagenomic Sequencing Applied and Environmental Microbiology Marcela A. Johnson, Boris A. Vinatzer, Song Li
2023	Inpactor2: a software based on deep learning to identify and classify LTR-retrotransposons in plant genomes Briefings in Bioinformatics Simon Orozco-Arias, Luis Humberto Lopez-Murillo, Mariana S Candamil-Cortés, Maradey Arias, Paula A Jaimes, Alexandre Rossi Paschoal, Reinel Tabares-Soto, Gustavo Isaza, Romain Guyot
2023	m6Aminer: Predicting the m6Am Sites on mRNA by Fusing Multiple Sequence-Derived Features into a CatBoost-Based Classifier International Journal of Molecular Sciences Ze Liu, Pengfei Lan, Ting Liu, Xudong Liu, Tao Liu
2023	The role of LTR retrotransposons in plant genetic engineering: how to control their transposition in the genome Plant Cell Reports Muthusamy Ramakrishnan, Pradeep K. Papolu, Sileesh Mullasseri, Mingbing Zhou, Anket Sharma, Zishan Ahmad, Viswanathan Satheesh, Ruslan Kalendar, Qiang Wei
2023	DNA-MP: a generalized DNA modifications predictor for multiple species based on powerful sequence encoding method Briefings in Bioinformatics Muhammad Nabeel Asim, Muhammad Ali Ibrahim, Ahtisham Fazeel, Andreas Dengel, Sheraz Ahmed
2023	Genomic object detection: An improved approach for transposable elements detection and classification using convolutional neural networks PLOS ONE Simon Orozco-Arias, Luis Humberto Lopez-Murillo, Johan S. Piña, Estiven Valencia-Castrillon, Reinel Tabares-Soto, Luis Castillo-Ossa, Gustavo Isaza, Romain Guyot
2023	Detection of malicious PE files using synthesized DNA artifacts Computers & Security Sunday Cosmos Ngwobia, Anca Ralescu, David Kapp, Temesgen Kebede
2023	Lecture Notes in Computer Science Silvia Astorino, Vincenzo Bonnici, Giuditta Franco
2023	Accurate Prediction of Antifreeze Protein from Sequences through Natural Language Text Processing and Interpretable Machine Learning Approaches The Journal of Physical Chemistry Letters Saikat Dhibar, Biman Jana
2022	Lecture Notes in Networks and Systems Simon Orozco-Arias, Mariana S. Candamil-Cortes, Paula A. Jaimes, Estiven Valencia-Castrillon, Reinel Tabares-Soto, Romain Guyot, Gustavo Isaza
2022	Automatic curation of LTR retrotransposon libraries from plant genomes through machine learning Journal of Integrative Bioinformatics Simon Orozco-Arias, Mariana S. Candamil-Cortes, Paula A. Jaimes, Estiven Valencia-Castrillon, Reinel Tabares-Soto, Gustavo Isaza, Romain Guyot
2021	An Atlas of Plant Transposable Elements F1000Research Daniel Longhi Fernandes Pedro, Tharcisio Soares Amorim, Alessandro Varani, Romain Guyot, Douglas Silva Domingues, Alexandre Rossi Paschoal
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