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2025	Cooperation and Competition Were Primary Driving Forces for Biological Evolution Microbial Physiology Milton H. Saier Jr.
2025	A silent sulfonamide-resistant microbial world: The curious case of missing DHPS in candidate phyla radiation Journal of Global Antimicrobial Resistance Riyad Razzouk, Adel Azour, Jean-Marc Rolain, Fadi Bittar
2024	The neglected giants: Uncovering the prevalence and functional groups of huge proteins in proteomes PLOS Computational Biology Anibal S. Amaral, Damien P. Devos
2024	Unveiling the hidden diversity and functional role of Chloroflexota in full-scale wastewater treatment plants through genome-centric analyses ISME Communications Patricia Bovio-Winkler, Angela Cabezas, Claudia Etchebehere
2024	Treatment of dairy wastewater using intermittent-aeration sequencing batch reactor at pilot-scale Bioresource Technology Reports Alejandro Rodriguez-Sanchez, Beatriz Gil-Pulido, Peter Leonard, William Finnegan, Xinmin Zhan, Alan D.W. Dobson, Niall O'Leary
2023	Effects of starters with different NDF/starch ratio on rumen fermentation parameters and rumen microorganisms in lambs Frontiers in Veterinary Science Haibi Zhao, Feng Lv, Guohua Liu, Xin Pang, Xiaoxia Han, Xiaojuan Wang
2023	Using Genomics to Decipher the Enigmatic Properties and Survival Adaptation of Candidate Phyla Radiation Microorganisms Mohamad Maatouk, Jean-Marc Rolain, Fadi Bittar
2023	Genome-Resolved Metagenomics of Nitrogen Transformations in the Switchgrass Rhizosphere Microbiome on Marginal Lands Agronomy Richard Allen White, Aaron Garoutte, Emily E. Mclachlan, Lisa K. Tiemann, Sarah Evans, Maren L. Friesen
2023	Neofunctionalization of S-adenosylmethionine decarboxylase into pyruvoyl-dependent L-ornithine and L-arginine decarboxylases is widespread in bacteria and archaea Journal of Biological Chemistry Bin Li, Jue Liang, Margaret A. Phillips, Anthony J. Michael
2022	Widespread but Poorly Understood Bacteria: Candidate Phyla Radiation Microorganisms Yanhan Ji, Ping Zhang, Sihan Zhou, Ping Gao, Baozhan Wang, Jiandong Jiang
2022	Assessing the Microbiological Health of Ecosystems Rene Hoover, Carlos De León, Mark A. Gallo
2022	Introducing clinical nanoarchaeaology: Isolation by co-culture of Nanopusillus massiliensis sp. nov. Current Research in Microbial Sciences Y. Hassani, J. Saad, E. Terrer, G. Aboudharam, B Giancarlo, F. Silvestri, D. Raoult, M. Drancourt, G. Grine
2022	Occurrence, Diversity, and Genomes of “ Candidatus Patescibacteria” along the Early Diagenesis of Marine Sediments Applied and Environmental Microbiology Rui Zhao, Ibrahim F. Farag, Steffen L. Jørgensen, Jennifer F. Biddle
2022	Long-Term Incubation of Lake Water Enables Genomic Sampling of Consortia Involving Planctomycetes and Candidate Phyla Radiation Bacteria mSystems Alexander L. Jaffe, Maxime Fuster, Marie C. Schoelmerich, Lin-Xing Chen, Jonathan Colombet, Hermine Billard, Télesphore Sime-Ngando, Jillian F. Banfield
2022	Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR Microbiome Maria-Cecilia Chiriac, Paul-Adrian Bulzu, Adrian-Stefan Andrei, Yusuke Okazaki, Shin-ichi Nakano, Markus Haber, Vinicius Silva Kavagutti, Paul Layoun, Rohit Ghai, Michaela M. Salcher
2021	Introducing Clinical Nanorachaeaology: Isolation by Co-Culture of <i>Nanopusillus massiliensis</i> sp. nov SSRN Electronic Journal Yasmine HASSANI, Jamal Saad, Elodie TERRER, Gerard ABOUDHARAM, Bianca Giancarlo, Frederic SILVESTRI, Didier RAOULT, Michel DRANCOURT, Ghiles Grine
2021	MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes BMC Bioinformatics Carlos A. Ruiz-Perez, Roth E. Conrad, Konstantinos T. Konstantinidis
2021	Candidatus List No. 2. Lists of names of prokaryotic Candidatus taxa International Journal of Systematic and Evolutionary Microbiology Aharon Oren, George M. Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Distinct bacterial communities in tropical island aquifers PLOS ONE Marek Kirs, Veljo Kisand, Craig E. Nelson, Tineill Dudoit, Philip S. Moravcik
2020	Charles Thomas Parker, George M Garrity
2020	Increased replication of dissimilatory nitrate-reducing bacteria leads to decreased anammox bioreactor performance Microbiome Ray Keren, Jennifer E. Lawrence, Weiqin Zhuang, David Jenkins, Jillian F. Banfield, Lisa Alvarez-Cohen, Lijie Zhou, Ke Yu
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Complete Genome of a Member of a New Bacterial Lineage in the Microgenomates Group Reveals an Unusual Nucleotide Composition Disparity Between Two Strands of DNA and Limited Metabolic Potential Microorganisms Vitaly V. Kadnikov, Andrey V. Mardanov, Alexey V. Beletsky, Olga V. Karnachuk, Nikolai V. Ravin
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Spatial and Temporal Dynamics in Attached and Suspended Bacterial Communities in Three Drinking Water Distribution Systems with Variable Biological Stability Environmental Science & Technology Charlotte D. Vavourakis, Leo Heijnen, Marjolein C. F. M. Peters, Leonie Marang, Henk A. M. Ketelaars, Wim A. M. Hijnen
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2020	Charles Thomas Parker, George M Garrity
2019	Metagenomic insights into production of zero valent sulfur from dissimilatory sulfate reduction in a methanogenic bioreactor Bioresource Technology Reports Wenwen Fang, Zhiwei Liang, Yulong Liu, Jiayuan Liao, Shanquan Wang
2019	Phytoremediation of cadmium-contaminated soil by Sorghum bicolor and the variation of microbial community Chemosphere Can Chen, Xu Wang, Jianlong Wang
2019	Divergent microbial communities in groundwater and overlying soils exhibit functional redundancy for plant-polysaccharide degradation PLOS ONE Martin Taubert, Jan Stähly, Steffen Kolb, Kirsten Küsel
2019	Genomic signatures and co‐occurrence patterns of the ultra‐small Saccharimonadia (phylum CPR/Patescibacteria) suggest a symbiotic lifestyle Molecular Ecology Leandro N. Lemos, Julliane D. Medeiros, Francisco Dini‐Andreote, Gabriel R. Fernandes, Alessandro M. Varani, Guilherme Oliveira, Victor S. Pylro
2018	Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle The ISME Journal Karthik Anantharaman, Bela Hausmann, Sean P Jungbluth, Rose S Kantor, Adi Lavy, Lesley A Warren, Michael S Rappé, Michael Pester, Alexander Loy, Brian C Thomas, Jillian F Banfield
2018	Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations Nature Reviews Microbiology Cindy J. Castelle, Christopher T. Brown, Karthik Anantharaman, Alexander J. Probst, Raven H. Huang, Jillian F. Banfield
2018	A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria Nature Kathryn M. Kauffman, Fatima A. Hussain, Joy Yang, Philip Arevalo, Julia M. Brown, William K. Chang, David VanInsberghe, Joseph Elsherbini, Radhey S. Sharma, Michael B. Cutler, Libusha Kelly, Martin F. Polz
2018	Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon Microbiome Evan P. Starr, Shengjing Shi, Steven J. Blazewicz, Alexander J. Probst, Donald J. Herman, Mary K. Firestone, Jillian F. Banfield
2018	A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments Microbiome Charlotte D. Vavourakis, Adrian-Stefan Andrei, Maliheh Mehrshad, Rohit Ghai, Dimitry Y. Sorokin, Gerard Muyzer
2018	The Local Ecological Memory of Soil: Majority and Minority Components of Bacterial Communities in Prehistorical Urns from Schöps (Germany) International Journal of Environmental Research Johann Michael Köhler, Franziska Kalensee, Peter Mike Günther, Tim Schüler, Jialan Cao
2018	Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface Nature Microbiology Alexander J. Probst, Bethany Ladd, Jessica K. Jarett, David E. Geller-McGrath, Christian M. K. Sieber, Joanne B. Emerson, Karthik Anantharaman, Brian C. Thomas, Rex R. Malmstrom, Michaela Stieglmeier, Andreas Klingl, Tanja Woyke, M. Cathryn Ryan, Jillian F. Banfield
2018	Genomic Approaches in Earth and Environmental Sciences
2017	Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations Environmental Microbiology Alexander J. Probst, Cindy J. Castelle, Andrea Singh, Christopher T. Brown, Karthik Anantharaman, Itai Sharon, Laura A. Hug, David Burstein, Joanne B. Emerson, Brian C. Thomas, Jillian F. Banfield
2017	Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation Scientific Reports Cindy J. Castelle, Christopher T. Brown, Brian C. Thomas, Kenneth H. Williams, Jillian F. Banfield
2017	Gifted microbes for genome mining and natural product discovery Journal of Industrial Microbiology and Biotechnology Richard H Baltz
2016	Measurement of bacterial replication rates in microbial communities Nature Biotechnology Christopher T Brown, Matthew R Olm, Brian C Thomas, Jillian F Banfield
2016	Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system Nature Communications Karthik Anantharaman, Christopher T. Brown, Laura A. Hug, Itai Sharon, Cindy J. Castelle, Alexander J. Probst, Brian C. Thomas, Andrea Singh, Michael J. Wilkins, Ulas Karaoz, Eoin L. Brodie, Kenneth H. Williams, Susan S. Hubbard, Jillian F. Banfield
2016	The bright side of microbial dark matter: lessons learned from the uncultivated majority Current Opinion in Microbiology Lindsey Solden, Karen Lloyd, Kelly Wrighton
2016	Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes Trends in Microbiology Philip E. Long, Kenneth H. Williams, Susan S. Hubbard, Jillian F. Banfield
2016	Bipartite graph analyses reveal interdomain LGT involving ultrasmall prokaryotes and their divergent, membrane‐related proteins Environmental Microbiology Alexander L. Jaffe, Eduardo Corel, Jananan Sylvestre Pathmanathan, Philippe Lopez, Eric Bapteste
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