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2025
Pneumococcal genotype 23B1 as a driver of increased 23B serotype carriage, penicillin non-susceptibility, and invasive disease in Belgium: a retrospective analysis
Journal of Clinical Microbiology
2025
Streptococcus pneumoniae serotype 33H: a novel serotype with frameshift mutations in the acetyltransferase gene wciG
Pneumonia
2025
Global pneumococcal sequence cluster lineage for invasive pneumococcal isolates in Denmark from summer 2019 to 2023
Scientific Reports
2025
Utilizing large and diverse bacterial genome datasets to improve the detection and identification of Streptococcus pneumoniae via PCR-based diagnostics
Microbial Genomics
2025
PneusPage: A WEB-BASED TOOL for the analysis of Whole-Genome Sequencing Data of Streptococcus pneumonia
Journal of Microbiology
2025
Optimizing nanopore adaptive sampling for pneumococcal serotype surveillance in complex samples using the graph-based GNASTy algorithm
Genome Research
2025
Genomic surveillance of invasive Streptococcus pneumoniae strains in south Tunisia during 2012–2022
Microbial Genomics
2025
The impact of pneumococcal vaccination and nasopharyngeal colonization on the performance of a serotype-specific urine antigen detection (SSUAD) assay
Vaccine
2025
Increasing incidence of serotype 38 invasive pneumococcal disease driven by the ST393 clone among children, Denmark 2022–2024
Scientific Reports
2025
Large-scale global molecular epidemiology of antibiotic resistance determinants in Streptococcus pneumoniae
Microbial Genomics
2025
Whole-genome sequencing, strain composition, and predicted antimicrobial resistance of Streptococcus pneumoniae causing invasive disease in England in 2017–20: a prospective national surveillance study
The Lancet Microbe
2025
Update on the evolving landscape of pneumococcal capsule types: new discoveries and way forward
Clinical Microbiology Reviews
2024
A genome-based survey of invasive pneumococci in Norway over four decades reveals lineage-specific responses to vaccination
Genome Medicine
2024
Serotype, antibiotic susceptibility and whole-genome characterization of Streptococcus pneumoniae in all age groups living in Southwest China during 2018–2022
Frontiers in Microbiology
2024
Invasive pneumococcal disease 3 years after introduction of a reduced 1 + 1 infant 13-valent pneumococcal conjugate vaccine immunisation schedule in England: a prospective national observational surveillance study
The Lancet Infectious Diseases
2024
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting
mBio
2024
AMRomics: a scalable workflow to analyze large microbial genome collections
BMC Genomics
2024
Identification of pneumococcal serotypes with individual recognition of vaccine types by a highly multiplexed real-time PCR-based MeltArray approach
Journal of Microbiology, Immunology and Infection
2024
Genome sequences of 36 Streptococcus pneumoniae strains optimized for the multiplexed opsonophagocytosis killing assay
Microbiology Resource Announcements
2024
Molecular Medical Microbiology
2024
Complete genome sequence of invasive Streptococcus pneumoniae serotype 11A causing meningitis in an adult patient, Italy 2022
Microbiology Resource Announcements
2024
A narrative review of genomic characteristics, serotype, immunogenicity, and vaccine development of Streptococcus pneumoniae capsular polysaccharide
Clinical and Experimental Vaccine Research
2024
Streptococcus pneumoniae serotype 33G: genetic, serological, and structural analysis of a new capsule type
Microbiology Spectrum
2024
Characterization of Streptococcus pneumoniae isolates obtained from the middle ear fluid of US children, 2011–2021
Frontiers in Pediatrics
2024
Implications of Cross-Reactivity and Cross-Protection for Pneumococcal Vaccine Development
Vaccines
2024
Impact of age on pneumococcal colonization of the nasopharynx and oral cavity: an ecological perspective
ISME Communications
2024
Detection of Streptococcus pneumoniae serotypes causing invasive and non-invasive infections using whole-genome sequencing
Clinical Microbiology and Antimicrobial Chemotherapy
2024
Potential impact of replacing the 13-valent pneumococcal conjugate vaccine with 15-valent or 20-valent pneumococcal conjugate vaccine in the 1 + 1 infant schedule in England: a modelling study
The Lancet Public Health
2024
A New Serotyping Method of Streptococcus pneumoniae Based on CRISPR/Cas9–Targeted Sequencing
The Journal of Molecular Diagnostics
2024
Evaluating methods for identifying and quantifying Streptococcus pneumoniae co-colonization using next-generation sequencing data
Microbiology Spectrum
2024
A clade of Streptococcus pneumoniae clonal complex 320 with increased tolerance to β-lactam antibiotics in a Chinese metropolitan city
Journal of Global Antimicrobial Resistance
2024
Antibiotic susceptibility testing and molecular characterization based on whole-genome sequencing of Streptococcus pneumoniae isolates from pediatric infections at the National Regional Medical Center of Southwest China during the COVID-19 pandemic
Frontiers in Public Health
2024
High-resolution genomics identifies pneumococcal diversity and persistence of vaccine types in children with community-acquired pneumonia in the UK and Ireland
BMC Microbiology
2024
Non-pharmaceutical interventions for COVID-19 transiently reduced pneumococcal and Haemophilus influenzae carriage in a cross-sectional pediatric cohort in Southampton, UK
Microbiology Spectrum
2023
The Molecular Approaches and Challenges of Streptococcus pneumoniae Serotyping for Epidemiological Surveillance in the Vaccine Era
Polish Journal of Microbiology
2023
PfaSTer: a machine learning-powered serotype caller for Streptococcus pneumoniae genomes
Microbial Genomics
2023
ClinMicroNow
2023
The metabolic, virulence and antimicrobial resistance profiles of colonising Streptococcus pneumoniae shift after PCV13 introduction in urban Malawi
Nature Communications
2023
ClinMicroNow
2023
Comparison of next generation technologies and bioinformatics pipelines for capsular typing of Streptococcus pneumoniae
Journal of Clinical Microbiology
2023
Household transmission of non-toxigenic diphtheria toxin gene-bearing Corynebacterium diphtheriae following a cluster of cutaneous cases in a specialist outpatient setting
Journal of Medical Microbiology
2023
Genomic analysis of Streptococcus pneumoniae serogroup 20 isolates in Alberta, Canada from 1993–2019
Microbial Genomics
2023
Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study
Wellcome Open Research
2023
Seasonal Azithromycin Use in Paediatric Protracted Bacterial Bronchitis Does Not Promote Antimicrobial Resistance but Does Modulate the Nasopharyngeal Microbiome
International Journal of Molecular Sciences
2023
Molecular characterization of invasive Streptococcus pneumoniae clinical isolates from a tertiary children’s hospital in eastern China
Microbiology Spectrum
2023
ClinMicroNow
2022
Current methods of capsular typing of Streptococcus pneumoniae: possibilities and availability for local laboratories
Clinical Microbiology and Antimicrobial Chemotherapy
2022
It Takes Two to Tango: Combining Conventional Culture With Molecular Diagnostics Enhances Accuracy of Streptococcus pneumoniae Detection and Pneumococcal Serogroup/Serotype Determination in Carriage
Frontiers in Microbiology
2022
Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
PLOS Computational Biology
2022
Recalibrated estimates of non-bacteremic and bacteremic pneumococcal community acquired pneumonia in hospitalized Canadian adults from 2010 to 2017 with addition of an extended spectrum serotype-specific urine antigen detection assay
Vaccine
2022
Encyclopedia of Respiratory Medicine
2022
Using Genomics to Understand the Epidemiology of Infectious Diseases in the Northern Territory of Australia
Tropical Medicine and Infectious Disease
2022
Changes in serotype prevalence of Streptococcus pneumoniae in Southampton, UK between 2006 and 2018
Scientific Reports
2022
Molecular Typing in Bacterial Infections, Volume I
2022
Effect of pneumococcal conjugate vaccine availability on Streptococcus pneumoniae infections and genetic recombination in Zhejiang, China from 2009 to 2019
Emerging Microbes & Infections
2022
Streptococcus pneumoniae: ‘captain of the men of death’ and financial burden
Microbiology
2022
Variants of Streptococcus pneumoniae Serotype 14 from Papua New Guinea with the Potential to Be Mistyped and Escape Vaccine-Induced Protection
Microbiology Spectrum
2022
Streptococcus pneumoniae serotype 15B polysaccharide conjugate elicits a cross-functional immune response against serotype 15C but not 15A
Vaccine
2022
Establishing a national reference laboratory for antimicrobial resistance using a whole-genome sequencing framework: Nigeria’s experience
Microbiology
2022
Extensive/Multidrug-Resistant Pneumococci Detected in Clinical Respiratory Tract Samples in Southern Sweden Are Closely Related to International Multidrug-Resistant Lineages
Frontiers in Cellular and Infection Microbiology
2022
Validation of Fourier Transform Infrared Spectroscopy for Serotyping of Streptococcus pneumoniae
Journal of Clinical Microbiology
2022
PneumoKITy: A fast, flexible, specific, and sensitive tool for Streptococcus pneumoniae serotype screening and mixed serotype detection from genome sequence data
Microbial Genomics
2021
VPsero: Rapid Serotyping of Vibrio parahaemolyticus Using Serogroup-Specific Genes Based on Whole-Genome Sequencing Data
Frontiers in Microbiology
2021
Using genomics to examine the persistence of Streptococcus pneumoniae serotype 19A in Ireland and the emergence of a sub-clade associated with vaccine failures
Vaccine
2021
Invasive pneumococcal disease due to 22F and 33F in England: A tail of two serotypes
Vaccine
2021
Transition of Serotype 35B Pneumococci From Commensal to Prevalent Virulent Strain in Children
Frontiers in Cellular and Infection Microbiology
2021
Mass drug administration with azithromycin for trachoma elimination and the population structure of Streptococcus pneumoniae in the nasopharynx
Clinical Microbiology and Infection
2021
Full NMR assignment, revised structure and biosynthetic analysis for the capsular polysaccharide from Streptococcus Pneumoniae serotype 15F
Carbohydrate Research
2021
Global genomic pathogen surveillance to inform vaccine strategies: a decade-long expedition in pneumococcal genomics
Genome Medicine
2021
Antigenic and genetic characterization of <i>Streptococcus pneumoniae</i> strains isolated from patients with invasive and non-invasive pneumococcal infections by using high-throughput sequencing
Journal of microbiology, epidemiology and immunobiology
2021
Molecular characterization and epidemiology of Streptococcus pneumoniae serotype 8 in Denmark
BMC Infectious Diseases
2021
The role of the human gut microbiota in colonization and infection with multidrug-resistant bacteria
Gut Microbes
2021
Molecular Characterization Based on Whole-Genome Sequencing of Streptococcus pneumoniae in Children Living in Southwest China During 2017-2019
Frontiers in Cellular and Infection Microbiology
2021
Group B Streptococcus cpsE Is Required for Serotype V Capsule Production and Aids in Biofilm Formation and Ascending Infection of the Reproductive Tract during Pregnancy
ACS Infectious Diseases
2021
Complete Genome Sequence of Streptococcus pneumoniae Strain BVJ1JL, a Serotype 1 Carriage Isolate from Malawi
Microbiology Resource Announcements
2021
Determining the serotype composition of mixed samples of pneumococcus using whole-genome sequencing
Microbial Genomics
2021
High-throughput nanofluidic real-time PCR to discriminate Pneumococcal Conjugate Vaccine (PCV)-associated serogroups 6, 18, and 22 to serotypes using modified oligonucleotides
Scientific Reports
2021
The Emergence of Invasive Streptococcus pneumoniae Serotype 24F in Lebanon: Complete Genome Sequencing Reveals High Virulence and Antimicrobial Resistance Characteristics
Frontiers in Microbiology
2021
Serotype Distribution of Streptococcus pneumoniae Isolates Causing Invasive and Non-Invasive Infections Using Whole-Genome Sequencing in Ethiopia
Infection and Drug Resistance
2020
Characterization of Streptococcus pneumoniae strains causing invasive infections using whole-genome sequencing
Journal of microbiology, epidemiology and immunobiology
2020
Pneumococcal carriage among children aged 4 – 12 years in Angola 4 years after the introduction of a pneumococcal conjugate vaccine
Vaccine
2020
Rapid identification, capsular typing and molecular characterization of Streptococcus pneumoniae by using whole genome nanopore sequencing
BMC Microbiology
2020
Streptococcus pneumoniae serotype distribution and antimicrobial nonsusceptibility trends among adults with pneumonia in the United States, 2009‒2017
Journal of Infection
2020
Factors influencing PCV13 specific antibody response in Danish children starting in day care
Scientific Reports
2020
A patient with respiratory toxigenic diphtheria in Greece after more than 30 years
Epidemiology and Infection
2020
Evaluation of Pneumococcal Serotyping of Nasopharyngeal-Carriage Isolates by Latex Agglutination, Whole-Genome Sequencing (PneumoCaT), and DNA Microarray in a High-Pneumococcal-Carriage-Prevalence Population in Malawi
Journal of Clinical Microbiology
2020
Toxigenic Corynebacterium ulcerans associated with upper respiratory infections in cats and dogs
Journal of Small Animal Practice
2020
Pneumococcal serotype trends, surveillance and risk factors in UK adult pneumonia, 2013–18
Thorax
2020
Two cases of imported respiratory diphtheria in Edinburgh, Scotland, October 2019
Epidemiology and Infection
2019
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact
EBioMedicine
2019
Semisynthetic Glycoconjugate Vaccines To Elicit T Cell-Mediated Immune Responses and Protection against Streptococcus pneumoniae Serotype 3
ACS Infectious Diseases
2019
Genomic epidemiology of penicillin-non-susceptible Streptococcus pneumoniae
Microbial Genomics
2019
Toward a Global Genomic Epidemiology of Meningococcal Disease
The Journal of Infectious Diseases
2019
Molecular characterization and epidemiology of Streptococcus pneumoniae serotype 24F in Denmark
Scientific Reports
2019
Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study
The Lancet Infectious Diseases
2019
Fourier transform infrared spectroscopy: unlocking fundamentals and prospects for bacterial strain typing
European Journal of Clinical Microbiology & Infectious Diseases
2019
Methods in Molecular Biology
2019
The Genomics of Streptococcus pneumoniae Carriage Isolates from UK Children and Their Household Contacts, Pre-PCV7 to Post-PCV13
Genes
2019
Evolution of Streptococcus pneumoniae Serotype 3 in England and Wales: A Major Vaccine Evader
Genes
2019
Whole-Genome Sequencing Analysis of Multidrug-Resistant Serotype 15A Streptococcus pneumoniae in Japan and the Emergence of a Highly Resistant Serotype 15A-ST9084 Clone
Antimicrobial Agents and Chemotherapy
2018
Use of genomics to design a diagnostic assay to discriminate between Streptococcus pneumoniae and Streptococcus pseudopneumoniae
Microbial Genomics
2018
Probiotics and carriage of Streptococcus pneumoniae serotypes in Danish children, a double-blind randomized controlled trial
Scientific Reports
2018
Spread of Meropenem-ResistantStreptococcus pneumoniaeSerotype 15A-ST63 Clone in Japan, 2012–2014
Emerging Infectious Diseases
2018
A Population-Based Descriptive Atlas of Invasive Pneumococcal Strains Recovered Within the U.S. During 2015–2016
Frontiers in Microbiology
2018
The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome
PLOS Pathogens
2018
A novel genetic variant of Streptococcus pneumoniae serotype 11A discovered in Fiji
Clinical Microbiology and Infection
2018
Molecular characterization of serogroup 19 Streptococcus pneumoniae in the Czech Republic in the post-vaccine era
Journal of Medical Microbiology
2018
Discovery and description of a new serogroup 7 Streptococcus pneumoniae serotype, 7D, and structural analysis of 7C and 7D
Carbohydrate Research
2018
PCR-based discrimination of emerging Streptococcus pneumoniae serotypes 22F and 33F
Journal of Microbiological Methods
2018
Multi-target plasmid controls for conventional and real-time PCR-based serotyping of Streptococcus pneumoniae
Plasmid
2018
Rapid Spread of Pneumococcal Nonvaccine Serotype 7C Previously Associated with Vaccine Serotype 19F, England and Wales
Emerging Infectious Diseases
2018
Discovery of a Streptococcus pneumoniae serotype 33F capsular polysaccharide locus that lacks wcjE and contains a wcyO pseudogene
PLOS ONE
2018
Pneumococcal carriage in children and their household contacts six years after introduction of the 13-valent pneumococcal conjugate vaccine in England
PLOS ONE
2018
Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine
Journal of Clinical Microbiology
2018
SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data
Microbial Genomics
2018
Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes
Journal of Clinical Microbiology
2018
Diversity-Generating Machines: Genetics of Bacterial Sugar-Coating
Trends in Microbiology
2017
Pneumococcal 23B Molecular Subtype Identified Using Whole Genome Sequencing
Genome Biology and Evolution
2017
Pneumonia and Streptococcus pneumoniae vaccine
Archives of Pharmacal Research
2017
Serious pneumococcal disease outbreak in men exposed to metal fume – detection, response and future prevention through pneumococcal vaccination
Vaccine
2017
Development of an Extended-Specificity Multiplex Immunoassay for Detection of Streptococcus pneumoniae Serotype-Specific Antigen in Urine by Use of Human Monoclonal Antibodies
Clinical and Vaccine Immunology
2017
Retrospective study of prognostic factors in pediatric invasive pneumococcal disease
PeerJ
2017
Comparison of sequential multiplex PCR, sequetyping and whole genome sequencing for serotyping of Streptococcus pneumoniae
PLOS ONE
2017
Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review
European Journal of Clinical Microbiology & Infectious Diseases
2017
Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States
Journal of Clinical Microbiology
2017
Whole genome sequencing of group AStreptococcus: development and evaluation of an automated pipeline foremmgene typing
PeerJ
2017
Clinical streptococcal isolates, distinct fromStreptococcus pneumoniae,but containing the β-glucosyltransferasettsgene and expressing serotype 37 capsular polysaccharide
PeerJ
2017
Strain Level Streptococcus Colonization Patterns during the First Year of Life
Frontiers in Microbiology
2017
Streptococcus pneumoniaeand chronic endobronchial infections in childhood
Pediatric Pulmonology
2017
Current challenges in the accurate identification of Streptococcus pneumoniae and its serogroups/serotypes in the vaccine era
Journal of Microbiological Methods
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