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2024
Investigating the relationship between microbial network features of giant kelp “seedbank” cultures and subsequent farm performance
PLOS ONE
2023
Genomes of Endotrypanum monterogeii from Panama and Zelonia costaricensis from Brazil: Expansion of Multigene Families in Leishmaniinae Parasites That Are Close Relatives of Leishmania spp.
Pathogens
2023
GenomeFLTR: filtering reads made easy
Nucleic Acids Research
2023
A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
BMC Genomics
2023
Natural variation of Macrocystis pyrifera gametophyte germplasm culture microbiomes and applications for improving yield in offshore farms
Journal of Phycology
2023
Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation
Molecular Ecology
2022
Music of metagenomics—a review of its applications, analysis pipeline, and associated tools
Functional & Integrative Genomics
2021
CONSULT: accurate contamination removal using locality-sensitive hashing
NAR Genomics and Bioinformatics
2021
The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data
Metabarcoding and Metagenomics
2021
ZWA: Viral genome assembly and characterization hindrances from virus-host chimeric reads; a refining approach
PLOS Computational Biology
2020
Assessment of databases to determine the validity of β- and γ-carbonic anhydrase sequences from vertebrates
BMC Genomics
2020
The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga
Marine Genomics
2020
Genome Survey Sequencing of In Vivo Mother Plant and In Vitro Plantlets of Mikania cordata
Plants
2019
Draft genome sequence of fastidious pathogen Ceratobasidium theobromae, which causes vascular-streak dieback in Theobroma cacao
Fungal Biology and Biotechnology
2019
Exploring the genome of Arctic Psychrobacter sp. DAB_AL32B and construction of novel Psychrobacter-specific cloning vectors of an increased carrying capacity
Archives of Microbiology
2019
Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus
Antioxidants
2019
Defending Our Public Biological Databases as a Global Critical Infrastructure
Frontiers in Bioengineering and Biotechnology
2019
Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination
Genome Biology
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