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2023	Cross-phyla protein annotation by structural prediction and alignment Genome Biology Fabian Ruperti, Nikolaos Papadopoulos, Jacob M. Musser, Milot Mirdita, Martin Steinegger, Detlev Arendt
2023	Independent Innexin Radiation Shaped Signaling in Ctenophores Molecular Biology and Evolution Jennifer Ortiz, Yuriy V Bobkov, Melissa B DeBiasse, Dorothy G Mitchell, Allison Edgar, Mark Q Martindale, Anthony G Moss, Leslie S Babonis, Joseph F Ryan
2021	The Roles of Protein Structure, Taxon Sampling, and Model Complexity in Phylogenomics: A Case Study Focused on Early Animal Divergences Biophysica Akanksha Pandey, Edward L. Braun
2020	The Mnemiopsis Genome Project Portal: integrating new gene expression resources and improving data visualization Database R Travis Moreland, Anh-Dao Nguyen, Joseph F Ryan, Andreas D Baxevanis
2020	Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes Trends in Parasitology Shannon J. Sibbald, Laura Eme, John M. Archibald, Andrew J. Roger
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