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David Couvin, Anne-Sophie Allaguy, Ayoub Ez-zari, Tomasz Jagielski, Nalin Rastogi

Prasit Palittapongarnpim

Sergio Buenestado-Serrano, Miguel Martínez-Lirola, Anzaan Dippenaar, Amadeo Sanz-Pérez, José Antonio Garrido-Cárdenas, Ana Belén Esteban-García, Adriana Justine García-Toledo, Cristina Rodríguez-Grande, Marta Herranz-Martín, Sheri M. Saleeb, Patricia Muñoz, Robin M. Warren, Laura Pérez-Lago, Darío García de Viedma

Christophe Guyeux, Christophe Sola, Camille Noûs, Guislaine Refrégier

Bert Bogaerts, Thomas Delcourt, Karine Soetaert, Samira Boarbi, Pieter-Jan Ceyssens, Raf Winand, Julien Van Braekel, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kathleen Marchal, Vanessa Mathys, Kevin Vanneste

Cheng Yee Tang, Rick Twee-Hee Ong

Shinji Maeda, Minako Hijikata, Nguyen Thi Le Hang, Pham Huu Thuong, Hoang Van Huan, Nguyen Phuong Hoang, Nguyen Van Hung, Vu Cao Cuong, Akiko Miyabayashi, Shintaro Seto, Naoto Keicho

David Couvin, Wilfried Segretier, Erick Stattner, Nalin Rastogi

Ana M. S. Guimaraes, Cristina K. Zimpel

Rita Macedo, Miguel Pinto, Vítor Borges, Alexandra Nunes, Olena Oliveira, Isabel Portugal, Raquel Duarte, João Paulo Gomes

Balig Panossian, Tamara Salloum, George F. Araj, Georges Khazen, Sima Tokajian

2025	Molecular typing of Mycobacterium tuberculosis: a review of current methods, databases, softwares, and analytical tools FEMS Microbiology Reviews David Couvin, Anne-Sophie Allaguy, Ayoub Ez-zari, Tomasz Jagielski, Nalin Rastogi
2024	Phylogenomics Prasit Palittapongarnpim
2024	Bridging the gap between molecular and genomic epidemiology in tuberculosis: inferring MIRU-VNTR patterns from genomic data Journal of Clinical Microbiology Sergio Buenestado-Serrano, Miguel Martínez-Lirola, Anzaan Dippenaar, Amadeo Sanz-Pérez, José Antonio Garrido-Cárdenas, Ana Belén Esteban-García, Adriana Justine García-Toledo, Cristina Rodríguez-Grande, Marta Herranz-Martín, Sheri M. Saleeb, Patricia Muñoz, Robin M. Warren, Laura Pérez-Lago, Darío García de Viedma
2021	CRISPRbuilder-TB: “CRISPR-builder for tuberculosis”. Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA PLOS Computational Biology Christophe Guyeux, Christophe Sola, Camille Noûs, Guislaine Refrégier
2021	A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches Journal of Clinical Microbiology Bert Bogaerts, Thomas Delcourt, Karine Soetaert, Samira Boarbi, Pieter-Jan Ceyssens, Raf Winand, Julien Van Braekel, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kathleen Marchal, Vanessa Mathys, Kevin Vanneste
2020	MIRUReader: MIRU-VNTR typing directly from long sequencing reads Bioinformatics Cheng Yee Tang, Rick Twee-Hee Ong
2020	Genotyping of Mycobacterium tuberculosis spreading in Hanoi, Vietnam using conventional and whole genome sequencing methods Infection, Genetics and Evolution Shinji Maeda, Minako Hijikata, Nguyen Thi Le Hang, Pham Huu Thuong, Hoang Van Huan, Nguyen Phuong Hoang, Nguyen Van Hung, Vu Cao Cuong, Akiko Miyabayashi, Shintaro Seto, Naoto Keicho
2020	Novel methods included in SpolLineages tool for fast and precise prediction ofMycobacterium tuberculosiscomplex spoligotype families Database David Couvin, Wilfried Segretier, Erick Stattner, Nalin Rastogi
2020	Mycobacterium bovis: From Genotyping to Genome Sequencing Microorganisms Ana M. S. Guimaraes, Cristina K. Zimpel
2019	Evaluation of a gene-by-gene approach for prospective whole-genome sequencing-based surveillance of multidrug resistant Mycobacterium tuberculosis Tuberculosis Rita Macedo, Miguel Pinto, Vítor Borges, Alexandra Nunes, Olena Oliveira, Isabel Portugal, Raquel Duarte, João Paulo Gomes
2018	First insights on the genetic diversity of MDR Mycobacterium tuberculosis in Lebanon BMC Infectious Diseases Balig Panossian, Tamara Salloum, George F. Araj, Georges Khazen, Sima Tokajian
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