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Pedro Henrique Marques, Thais Cristina Vilela Rodrigues, Eduardo Horta Santos, Lucas Bleicher, Flavia Figueira Aburjaile, Flaviano S. Martins, Carlo Jose Freire Oliveira, Vasco Azevedo, Sandeep Tiwari, Siomar Soares

Sneha Dokhale, Samiksha Garse, Shine Devarajan, Vaishnavi Thakur, Shaunak Kolhapure

Annabelle Mathieu-Denoncourt, Marylise Duperthuy

Ahmet Efe Köseoğlu, Filiz Özgül, Elif Naz Işıksal, Yusuf Şeflekçi, Deniz Tülümen, Buminhan Özgültekin, Gülsüm Deniz Köseoğlu, Sena Özyiğit, Murat Ihlamur, Yağmur Ekenoğlu Merdan

Ahmet Efe Köseoğlu, Hüseyin Can, Mervenur Güvendi, Sedef Erkunt Alak, Aysu Değirmenci Döşkaya, Muhammet Karakavuk, Mert Döşkaya, Cemal Ün

Emre Aktaş, Nehir Özdemir Özgentürk

Diego Lucas Neres Rodrigues, Juan Carlos Ariute, Mariana Vieira Dias, Larissa Amorim Tourinho de Vasconcelos, Mateus Sudario Pereira, Vasco Azevedo, Paula Carvalhal Lage von Buettner Ristow, Ana Maria Benko-Iseppon, Flávia Figueira Aburjaile

Marcelo Silva Folhas Damas, Fernando Gabriel Mazur, Caio Cesar de Melo Freire, Anderson Ferreira da Cunha, Maria-Cristina da Silva Pranchevicius

Xinying Shan, Junfeng Fu, Xiaohui Li, Xu Peng, Lanming Chen

Zakia Akter, Anamul Haque, Md. Sabir Hossain, Firoz Ahmed, Md Asiful Islam

Hüseyin Can, Ahmet Efe Köseoğlu, Sedef Erkunt Alak, Mervenur Güvendi, Mert Döşkaya, Muhammet Karakavuk, Adnan Yüksel Gürüz, Cemal Ün

2025	Design of a multi-epitope vaccine (vme-VAC/MST-1) against cholera and vibriosis based on reverse vaccinology and immunoinformatics approaches Journal of Biomolecular Structure and Dynamics Pedro Henrique Marques, Thais Cristina Vilela Rodrigues, Eduardo Horta Santos, Lucas Bleicher, Flavia Figueira Aburjaile, Flaviano S. Martins, Carlo Jose Freire Oliveira, Vasco Azevedo, Sandeep Tiwari, Siomar Soares
2025	Computational Methods for Rational Drug Design Sneha Dokhale, Samiksha Garse, Shine Devarajan, Vaishnavi Thakur, Shaunak Kolhapure
2025	Functional Versatility of Vibrio cholerae Outer Membrane Proteins Applied Microbiology Annabelle Mathieu-Denoncourt, Marylise Duperthuy
2024	In silico discovery of diagnostic/vaccine candidate antigenic epitopes and a multi-epitope peptide vaccine (NaeVac) design for the brain-eating amoeba Naegleria fowleri causing human meningitis Gene Ahmet Efe Köseoğlu, Filiz Özgül, Elif Naz Işıksal, Yusuf Şeflekçi, Deniz Tülümen, Buminhan Özgültekin, Gülsüm Deniz Köseoğlu, Sena Özyiğit, Murat Ihlamur, Yağmur Ekenoğlu Merdan
2024	Molecular characterization of Anaplasma ovis Msp4 protein in strains isolated from ticks in Turkey: A multi-epitope synthetic vaccine antigen design against Anaplasma ovis using immunoinformatic tools Biologicals Ahmet Efe Köseoğlu, Hüseyin Can, Mervenur Güvendi, Sedef Erkunt Alak, Aysu Değirmenci Döşkaya, Muhammet Karakavuk, Mert Döşkaya, Cemal Ün
2024	A comprehensive examination of ACE2 receptor and prediction of spike glycoprotein and ACE2 interaction based on in silico analysis of ACE2 receptor Journal of Biomolecular Structure and Dynamics Emre Aktaş, Nehir Özdemir Özgentürk
2024	Reverse Vaccinology Diego Lucas Neres Rodrigues, Juan Carlos Ariute, Mariana Vieira Dias, Larissa Amorim Tourinho de Vasconcelos, Mateus Sudario Pereira, Vasco Azevedo, Paula Carvalhal Lage von Buettner Ristow, Ana Maria Benko-Iseppon, Flávia Figueira Aburjaile
2022	A Systematic Immuno-Informatic Approach to Design a Multiepitope-Based Vaccine Against Emerging Multiple Drug Resistant Serratia marcescens Frontiers in Immunology Marcelo Silva Folhas Damas, Fernando Gabriel Mazur, Caio Cesar de Melo Freire, Anderson Ferreira da Cunha, Maria-Cristina da Silva Pranchevicius
2022	Comparative proteomics and secretomics revealed virulence, and coresistance-related factors in non O1/O139 Vibrio cholerae recovered from 16 species of consumable aquatic animals Journal of Proteomics Xinying Shan, Junfeng Fu, Xiaohui Li, Xu Peng, Lanming Chen
2020	Aggregation Prone Regions in Antibody Sequences Raised Against Vibrio cholerae: A Bioinformatic Approach Current Bioinformatics Zakia Akter, Anamul Haque, Md. Sabir Hossain, Firoz Ahmed, Md Asiful Islam
2020	In silico discovery of antigenic proteins and epitopes of SARS-CoV-2 for the development of a vaccine or a diagnostic approach for COVID-19 Scientific Reports Hüseyin Can, Ahmet Efe Köseoğlu, Sedef Erkunt Alak, Mervenur Güvendi, Mert Döşkaya, Muhammet Karakavuk, Adnan Yüksel Gürüz, Cemal Ün
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