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2023
Improving Orthologous Signal and Model Fit in Datasets Addressing the Root of the Animal Phylogeny
Molecular Biology and Evolution
2023
AlexandrusPS: A User-Friendly Pipeline for the Automated Detection of Orthologous Gene Clusters and Subsequent Positive Selection Analysis
Genome Biology and Evolution
2022
Genome assembly of the Pendlebury’s roundleaf bat, Hipposideros pendleburyi, revealed the expansion of Tc1/Mariner DNA transposons in Rhinolophoidea
DNA Research
2022
The Antarctic Weddell seal genome reveals evidence of selection on cardiovascular phenotype and lipid handling
Communications Biology
2022
Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains
mBio
2021
The Interspecific Fungal Hybrid Verticillium longisporum Displays Subgenome-Specific Gene Expression
mBio
2021
PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection
Bioinformatics
2021
Comparative analysis of testis transcriptomes in laboratory cohorts of recently diverged allopatric Drosophila nasuta nasuta and Drosophila nasuta albomicans
Journal of Asia-Pacific Entomology
2020
Genome Architecture Facilitates Phenotypic Plasticity in the Honeybee (Apis mellifera)
Molecular Biology and Evolution
2020
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
Nature Communications
2020
Evolutionary Ecology of Plant-Herbivore Interaction
2019
Paternally Expressed Imprinted Genes under Positive Darwinian Selection in Arabidopsis thaliana
Molecular Biology and Evolution
2019
Comparative genomics provides new insights into the remarkable adaptations of the African wild dog (Lycaon pictus)
Scientific Reports
2019
Return to the Sea, Get Huge, Beat Cancer: An Analysis of Cetacean Genomes Including an Assembly for the Humpback Whale (Megaptera novaeangliae)
Molecular Biology and Evolution
2018
FUSTr: a tool to find gene families under selection in transcriptomes
PeerJ
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