Bioinformatics at PeerJ

Latest articles

Prognostic significance and pathogenesis of RFC3 gene expression in diffuse large B-cell lymphoma

Zuguo Tian, Shuiyu Liu, Chunlan Weng

ybx1 acts upstream of atoh1a to promote the rapid regeneration of hair cells in zebrafish lateral-line neuromasts

Caleb C. Reagor, Paloma Bravo, A.J. Hudspeth

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Transcriptome analysis of substrate temperature effects on adventitious root formation in peach rootstocks

Fan Zhang, Hong Wang, Chenbing Wang, Xiaoshan Wang, Jiaxuan Ren, Meimiao Guo

Development of a prognostic RiskScore model using efferocytosis-related signature genes for lung adenocarcinoma

Zengmin Dai, Shaofeng Jin, Shanshan Huang, Bingyang Liu, Xingkai Shen, Yuhong Jin

Widely read

scikit-image: image processing in Python

Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, Tony Yu

160,421 views · 34,224 downloads

Var3PPred: variant prediction based on 3-D structure and sequence analyses of protein-protein interactions on autoinflammatory diseases

Alper Bülbül, Emel Timucin, Ahmet Can Timuçin, Osman Uğur Sezerman, Eda Tahir Turanli

104,800 views · 71 downloads

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé

81,947 views · 9,972 downloads

Data reuse and the open data citation advantage

Heather A. Piwowar, Todd J. Vision

71,065 views · 6,060 downloads

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

Dongwan D. Kang, Jeff Froula, Rob Egan, Zhong Wang

49,530 views · 7,021 downloads

Editors' picks

16 September 2025

ybx1 acts upstream of atoh1a to promote the rapid regeneration of hair cells in zebrafish lateral-line neuromasts

Caleb C. Reagor, Paloma Bravo, A.J. Hudspeth

Transcriptome analysis of substrate temperature effects on adventitious root formation in peach rootstocks

Fan Zhang, Hong Wang, Chenbing Wang, Xiaoshan Wang, Jiaxuan Ren, Meimiao Guo

Recently cited

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé

8,299 citations · 81,947 views · 9,972 downloads

scikit-image: image processing in Python

Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, Tony Yu

4,994 citations · 160,421 views · 34,224 downloads

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This Bioinformatics Overlay is a subset of the peer-reviewed articles found in PeerJ, PeerJ Computer Science .

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PeerJ Expert Curations: Molecular Ecology

RiTA 2023: Robotics and AI for Digital Futures

International Conference on Machine Learning and Intelligent Systems (MLIS)

Revolutionizing Healthcare: The Role of AI and Machine Learning

Artificial Intelligence for Mental Health: Advancements, Challenges, and Ethical Implications

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